SELECT 
  cscart_products_categories.product_id, 
  GROUP_CONCAT(
    IF(
      cscart_products_categories.link_type = "M", 
      CONCAT(
        cscart_products_categories.category_id, 
        "M"
      ), 
      cscart_products_categories.category_id
    )
  ) AS category_ids, 
  product_position_source.position AS position 
FROM 
  cscart_products_categories 
  INNER JOIN cscart_categories ON cscart_categories.category_id = cscart_products_categories.category_id 
  AND cscart_categories.company_id = 1 
  AND (
    cscart_categories.usergroup_ids = '' 
    OR FIND_IN_SET(
      0, cscart_categories.usergroup_ids
    ) 
    OR FIND_IN_SET(
      1, cscart_categories.usergroup_ids
    )
  ) 
  AND cscart_categories.status IN ('A', 'H') 
  LEFT JOIN cscart_products_categories AS product_position_source ON cscart_products_categories.product_id = product_position_source.product_id 
  AND product_position_source.category_id = 3359 
WHERE 
  cscart_products_categories.product_id IN (
    5541, 5548, 5537, 5535, 5534, 5547, 5543, 
    5545, 5536, 5539, 5542, 5538, 5549, 
    5546, 5540, 5544, 6788, 6725, 6726, 
    6785, 6786, 6789, 6787
  ) 
GROUP BY 
  cscart_products_categories.product_id

Query time 0.00052

JSON explain

{
  "query_block": {
    "select_id": 1,
    "table": {
      "table_name": "cscart_products_categories",
      "access_type": "range",
      "possible_keys": ["PRIMARY", "pt"],
      "key": "pt",
      "key_length": "3",
      "used_key_parts": ["product_id"],
      "rows": 24,
      "filtered": 100,
      "index_condition": "cscart_products_categories.product_id in (5541,5548,5537,5535,5534,5547,5543,5545,5536,5539,5542,5538,5549,5546,5540,5544,6788,6725,6726,6785,6786,6789,6787)"
    },
    "table": {
      "table_name": "product_position_source",
      "access_type": "eq_ref",
      "possible_keys": ["PRIMARY", "pt"],
      "key": "PRIMARY",
      "key_length": "6",
      "used_key_parts": ["category_id", "product_id"],
      "ref": ["const", "rfswire_cart.cscart_products_categories.product_id"],
      "rows": 1,
      "filtered": 100
    },
    "table": {
      "table_name": "cscart_categories",
      "access_type": "eq_ref",
      "possible_keys": ["PRIMARY", "c_status", "p_category_id"],
      "key": "PRIMARY",
      "key_length": "3",
      "used_key_parts": ["category_id"],
      "ref": ["rfswire_cart.cscart_products_categories.category_id"],
      "rows": 1,
      "filtered": 100,
      "attached_condition": "cscart_categories.company_id = 1 and (cscart_categories.usergroup_ids = '' or find_in_set(0,cscart_categories.usergroup_ids) or find_in_set(1,cscart_categories.usergroup_ids)) and cscart_categories.`status` in ('A','H')"
    }
  }
}

Result

product_id category_ids position
5534 3359M 0
5535 3359M 0
5536 3359M 0
5537 3359M 0
5538 3359M 0
5539 3359M 0
5540 3359M 0
5541 3359M 0
5542 3359M 0
5543 3359M 0
5544 3359M 0
5545 3359M 0
5546 3359M 0
5547 3359M 0
5548 3359M 0
5549 3359M 0
6725 3359M 0
6726 3359M 0
6785 3359M 0
6786 3359M 0
6787 3359M 0
6788 3359M 0
6789 3359M 0